Showing posts with label Alice Fairhurst. Show all posts
Showing posts with label Alice Fairhurst. Show all posts

Friday, June 14, 2013

The First Ever Independent Genetic Genealogy Conference was a Smashing Success!



It has been a week now since our history-making  SCGS/ISOGG Genetic Genealogy Conference in Burbank. It was a smashing success in every way. I wanted to take a moment to thank all of the speakers who generously came, often from all the way across the country, to share their knowledge and expertise with us. I was thrilled and honored by the enthusiastic response from all of the speakers to my invitations to participate.

Professor Henry Louis Gates, Jr. and Dr. Spencer Wells were our headliner speakers and they definitely lived up to their reputations (and more). We would have been extremely lucky to have even one of them attend. For me, having both accept my invitation to speak was nothing short of incredible!

Dr. Wells of National Geographic did a wonderful job encouraging all of us citizen scientists and recognizing our efforts. I had seen him speak before and always love how he makes the science so interesting and approachable, even for the beginners in the audience. Dr. Wells spent the day at the conference, attending presentations and interacting with the community. He even joined us for dinner and socialized with a group of genetic genealogists late into the night. He is definitely one of us!

The packed house for Spencer Wells' wonderful opening presentation

Professor Gates spoke at our luncheon and he was absolutely hilarious! I had no idea he would have us rolling in the aisles with laughter the way he did. If he ever decides that he wants a new career, stand-up comedy should be first on his list! He regaled us with tales of his own family history and his early ventures into television. The Professor was a fitting participant in our history-making day since his PBS shows were the first to introduce genetic genealogy into American homes. He also stuck around most of the day, attending presentations and socializing with the attendees. (I have to tell you that giving a presentation while looking out on the audience of Dr. Wells, Professor Gates, Dr. Mountain and many of my colleagues was quite intimidating!)

Professor Gates entertaining us

With these two celebrities, it might seem easy to forget our other speakers, except that they were all so outstanding in their own right! We had wonderful representation from the companies that our community depends on - Bennett Greenspan from Family Tree DNA, Dr. Joanna Mountain from 23andMe and Dr. Ken Chahine from AncestryDNA all gave presentations packed full of valuable information for genetic genealogists. Their speeches were standing room only. This was a very important part of the event to me. From the beginning of the planning process, one of my goals for the conference was to gather management from all of these companies in one place with the common purpose of promoting the education of the community. This was the very first time that this has happened and it will not be the last time.

Dr. Mountain explaining the finer points

Many of our leading genetic genealogists also generously gave of their time to ensure that our first conference would be a success. The informative presentations from Dr. Tim Janzen, Blaine Bettinger, Judy Russell, Dick Hill, Debbie Parker-Wayne, Alice Fairhurst, David Reynolds, Emily Aulicino and Katherine Borges were essential to this groundbreaking event. Many of these presentations were livestreamed and/or recorded so more people could benefit from these outstanding speeches. Dr. Kathy Johnston and Bonny Cook were also integral to the event and helped it to run as smoothly as it did. Additionally, all of the roundtable discussion leaders and the general volunteer efforts were very much appreciated by us all.


Blaine Bettinger sharing his knowledge

We had a total of 352 attendees, including speakers, which is a very good turnout for the first conference of this kind in the history of our field. We even had attendees from China, Australia and the UK, making this an international event! Thank you all for the tremendous support! The success of this inaugural event ensures that we can hold similar conferences in the future. This has proven that the time had indeed come for genetic genealogy to have its own annual conference. Thanks to SCGS for giving us this trial run, Paula Hinkel for her expertise in conference planning, which ensured a perfectly executed day, and Vicki Hilb for taking such good care of the speakers.

Next year we plan to hold the event on the East Coast, so those who could not make the long trip this year can participate in our second annual conference. I hope to again entice our wonderful Dr. Wells and Professor Gates to join us (they say they will!). We intend to hold a two day event next time in order to allow attendees to see more of the speakers and presentations. I will update everyone once we have dates and a location nailed down. I hope it will be as much fun as this one was!

Unfortunately, I didn't get pictures of everyone since it was such a whirlwind day, but thanks to Tim Janzen, I have quite a few to share with you all.  (His are the clear ones. :-))

 CeCe and Professor Gates
Tim Janzen Presenting

Dick Hill telling his tale...

The Gates Luncheon
 
Confirming My Pedigree with DNA
What the Livestreaming looked like from our end


Does DNA Testing Work?

Socializing was fun with Blaine...
...and Debbie Parker-Wayne (with Cyndi Howells of "Cyndi's List" in the background)

I couldn't have asked for a better group of people with whom to share the day! There were so many familiar faces and friendly people that it was impossible to have the time to speak to everyone I wanted to. It was wonderful to be among people who share the same passion for genetic genealogy. Thank you to everyone who made the event so successful. It really was a dream come true!

Update: I received some great new photos from Katherine Borges which I have added, two below and one above in the section about Dr. Well's speech.

Adam, Spencer Wells, me, Lennart, Leo and Alice's infamous gold hat
At the Jamboree ISOGG booth, Back Row: Emily, Bonny, me, Kathy
Front Row: Linda and Katherine

Thursday, September 20, 2012

Let's All Start Using Terminal SNP Labels Instead of Y Haplogroup Subclade Names, Okay?


Is it just me or have the subclade names for Y-DNA just gotten out of control? I work with DNA all day long and I can't even keep up with all of the changes, so I have decided to start using the Terminal SNP labels exclusively. May I gently suggest that you do so also?













I frequently receive emails from otherwise well-informed people asking what their Y-DNA haplogroup subclade means, and it isn't their fault they are confused. You see, if they try to Google it, they are often unable to find information. If they try to locate academic papers on it, they are usually unsuccessful. Why is this? Well, the subclade name that they are given by their testing company may not be the same name that another testing company uses, or even the same as it was when they were first assigned it...and, quite likely, it isn't the same as the one on the most up-to-date tree at the International Society of Genetic Genealogy.

I have to admit that when R1b1b2 was changed to R1b1a2, I just started saying "R1b...whatever" when referring to it. Isn't it easier to just remember the defining SNP name R-M269?

For example, if you are R-L21+, then according to Family Tree DNA's Haplotree, you are R1b1a2a1a1b4, the ISOGG 2011 Haplogroup Tree's name for it. At 23andMe, you are R1b1b2a1a2f in agreement with the 2010 ISOGG Haplogroup Tree. If you tested in 2008, you might still think you are R1b1b2a1b6.  On ISOGG's 2011 Haplogroup Tree , L21+ was R1b1a2a1a1b4, but on ISOGG's 2012 Haplotree, you are R1b1a2a1a1b3. Apparently, R1b1a2a1a1b4 is now referring to L238/S182! I mean, really, how can anyone keep track? (Ah, for the days of the simple little R tree.) I don't know how our ISOGG Haplogroup Tree Committee* does it anymore! Apparently, the academics are getting tired of it too and it's just going to get worse when results from Geno 2.0 start rolling in with LOTS of new SNPs and subclades being defined.

Take look at the history of R-M222, the "Ui Niall Subclade", on just the ISOGG SNP Tree:
2007 = R1b1c7
2008 = R1b1b2a1b6b
2009 = R1b1b2a1a2f2
2010 = R1b1b2a1a2f2
2011 = R1b1a2a1a1b4b
2012 = R1b1a2a1a1b3a1a1

Reportedly, Geno 2.0 will define at least three new subclades beneath M222, but I hear it may be more. Do you think those subclade names might get even longer?









The R Haplogroup Tree is definitely the worst, but the problem is starting to affect other haplogroups too. At FTDNA, my dad is I2b1. Same at 23andMe. Sounds simple, right? Not anymore! The subclade name was recently changed to I2a2a on the ISOGG 2012 tree. I am so confused! This was one subclade name that I felt very comfortable with. I think I will just learn to call it I-M223 from now on. (I'll just ignore that his brother recently tested Z2062+, which isn't even on any of the trees yet!)

Actually, there is some rhyme or reason to these discrepancies, so let me share it for those of you who have no idea what I am writing about. FTDNA last updated their Y haplogroup tree in 2010 and 23andMe in 2011.*  So, they are going by the subclade names that were recognized at those times. In contrast, the ISOGG Haplogroup Tree has been updated over 60 times JUST THIS YEAR! Every time a new SNP is discovered that is upstream of a known SNP (which is happening faster and faster all the time), it has to be inserted into the tree, thus changing the subclade naming pattern. This is why it is so much simpler to just learn the Terminal SNP label.

The ISOGG Haplogroup Tree is a tremendous resource that anyone who is doing Y-DNA research should be utilizing. It helps to keep things straight by giving the various names of the SNPs that are being used by different companies and labs. When two or more SNPs are identical, meaning that they are on the same place on the Y-haplogroup tree with the same mutation, ISOGG shows the names in a series punctuated by "/". For example, let's look at M173/P241/Page29. M173 comes from Peter Underhill's lab at Stanford; P241 comes from Michael Hammer's lab at the University of Arizona and Page29 comes from the Page, Whitehead Institute for Biomedical Research. They appear in academic publications with these names and ISOGG lets you know that they are identical SNPs. That way, if you are Googling or looking for academic papers about your SNP, you know to try those ones too.

Going back to my first example of R-L21+; Wikipedia states, "R1b1a2a1a1b4 (R-L21) is defined by the presence of the marker L21, also referred to as M529 and S145." The label L21 comes from Thomas Krahn's FTDNA lab in Houston, M529 comes from Peter Underhill's lab at Stanford and S145 comes from Jim Wilson's lab at University of Edinburgh. ISOGG shows the SNP as L21/M529/S145. The bottom line is that if you test L21, M529 or S145 at any company, your assignment is in an identical place on the Y-DNA tree, so the subclade name is not the significant factor, the SNP name is.

Of course, with so many new SNPs being discovered and assigned to the tree, there will likely be a certain amount of continuing confusion among those of us doing Y-DNA research for the time being, but I hope you will all consider joining me in taking the next step forward in the evolution of Y-DNA research in genetic genealogy and stop trying to remember those mind-bending sublcade names! And, while we're at it, let's give our ISOGG Y-Haplotree Committee a well-deserved virtual pat on the back too!



*History:
The Y Chromosome Consortium (YCC) is a cooperative association of geneticists, led by Dr. Michael Hammer, who first published the paper in 2002, "A Nomenclature System for the Tree of Human Y-Chromosomal Binary Haplogroups", introducing the modern haplogroup nomenclature of Y-DNA. The tree was subsequently revised in 2003 by Mark A. Jobling and Chris Tyler-Smith in another paper, "The human Y chromosome: an evolutionary marker comes of age". Next, Family Tree DNA created the 2005 Y-Chromosome Phylogenetic Tree, which was the first online tree and only available to their customers. Soon thereafter, ISOGG created the first public online tree in 2006.  Tatiana Karafet of Dr. Hammer's lab (and others) published a paper further refining the Y chromosome tree in 2008, "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". As a result, both FTDNA and ISOGG updated their trees at that time. Then in 2010, FTDNA came out with a YCC-sanctioned tree which was distributed at the FTDNA conference and, as a result, ISOGG promptly did a major update to stay in alignment with the YCC.  Since then, no updates have come from the YCC. Undaunted, the ISOGG Y Haplogroup Tree Committee has continued to add information as it becomes available from various sources and is now the most up-to-date source of this information.  In November 2011 at the FTDNA Project Administrator's Conference, Spencer Wells of National Geographic, Michael Hammer of the University of Arizona, Thomas Krahn and Bennett Greenspan of FTDNA and Alice Fairhurst of ISOGG, reportedly agreed to all stay in alignment with the most current Y-DNA nomenclature to the best of their abilities. As always, there is new research that has not yet become public. As it is released, ISOGG will again align its tree with the most current information and will continue to add updates as they become available. With the upcoming launch of Geno 2.0, the ISOGG Committee will have their work cut out for them! Current ISOGG members who work with the tree and deserve our great appreciation are: Coordinator: Alice Fairhurst. Design team: Tanmoy Bhattacharya, Tom Hutchison, Richard Kenyon, Doug McDonald. Content experts: Abdulaziz Ali, Whit Athey, Ray H. Banks, Katherine Hope Borges, Aaron R. Brown, Phil Goff, Gareth Henson, Tim Janzen, Bob May, Eugene Matyushonok, Lawrence Mayka, Charles Moore, Ana Oquendo Pabon, Marja Pirttivaara, David Reynolds, Bonnie Schrack, Vince Tilroe, Aaron Salles Torres, Steve Trangsrud, Ann Turner and David Wilson.